PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G026300.3
Common NameB456_008G026300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 297aa    MW: 33699.2 Da    PI: 8.9458
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G026300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.21.4e-11264288125
             G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                         k+r++W+peLH+rFv+a++qLGGs+
  Gorai.008G026300.3 264 KQRRCWSPELHRRFVNALQQLGGSQ 288
                         79*********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-9262288IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-7264286IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGSVPPELSL DFRPTFVPKT ICTFLKEVSL IGNVPDKVSK LDAFVKRLEE EMRKIDAFKR  60
ELPLCMLLLN DAIVALKEES VQCMSRNVEP VLEEFIPLKN KKENNRSEED GALITNKKEK  120
DSNNNCNNNK DKKNWMSSVQ LWNTDDDYSS ISHKLDSKRK DGDSSQGCKN RGTATAFMPF  180
KMNLGFAVRK EEKEEIPVHG LTLLTPGIKN LKEESCSTGS RTSCSRAVSS SAPNAQSTFR  240
SVPQPLSHHQ QQQQQQQQQQ TARKQRRCWS PELHRRFVNA LQQLGGSQGE QMMFHW*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436209.10.0PREDICTED: uncharacterized protein LOC105762834
TrEMBLA0A0D2R7W50.0A0A0D2R7W5_G
STRINGVIT_03s0063g01060.t011e-105(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-26G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]